PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017487

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRF

Protein Properties

Length: 343aa MW: 38007.6 Da PI: 8.933

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-34639	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	6.8e-25	87	131	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Lsa017487 87 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 131 79****************************************986 PP
2	QLQ	61.4	2.5e-21	25	60	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+ Q+q+L++Q+l+yKyL+a++PvP +L+++i++ Lsa017487 25 PFTPVQWQELEHQALIYKYLVAGVPVPYDLVVPIRR 60 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.3E-11	24	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.3E-15	25	59	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.737	25	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	87	131	IPR014977	WRC domain
Pfam	PF08879	4.0E-21	88	130	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MSGSTTVAVA GGGGGGGGIS GYRPPFTPVQ WQELEHQALI YKYLVAGVPV PYDLVVPIRR 60 SLEALSARFF TNPTSLSYCS YYGKKFDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR 120 GRNRSRKPVE SQSQSLSQSQ SQSQSASQPL STTAVSNVST VSNGGNRSYQ NLGNGSFQNS 180 SLYPTSSSCS FDFGSNVSKL QVHGSAYGIN NNSFRYDQSL TVDVDDQNYT SXYMASTPKP 240 NSHIFFNGIK NRTLTQTKSM VNFDSVVDPI SMSKPSQQQQ QQQQHCLFGS KIGSPIEVKN 300 EQQSMRPFFD EWPEAREPWS TTQLSMSTTN DYTARSDCTS NDG

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MSGSTTVAVA GGGGGGGGIS GYRPPFTPVQ WQELEHQALI YKYLVAGVPV PYDLVVPIRR  60
SLEALSARFF TNPTSLSYCS YYGKKFDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR  120
GRNRSRKPVE SQSQSLSQSQ SQSQSASQPL STTAVSNVST VSNGGNRSYQ NLGNGSFQNS  180
SLYPTSSSCS FDFGSNVSKL QVHGSAYGIN NNSFRYDQSL TVDVDDQNYT SXYMASTPKP  240
NSHIFFNGIK NRTLTQTKSM VNFDSVVDPI SMSKPSQQQQ QQQQHCLFGS KIGSPIEVKN  300
EQQSMRPFFD EWPEAREPWS TTQLSMSTTN DYTARSDCTS NDG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605690.1	1e-111	PREDICTED: growth-regulating factor 4-like isoform X2
Refseq	XP_016481859.1	1e-111	PREDICTED: growth-regulating factor 4-like isoform X2
TrEMBL	A0A118JU76	1e-149	A0A118JU76_CYNCS; Glutamine-Leucine-Glutamine, QLQ
STRING	Solyc08g075950.1.1	1e-109	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-48	growth-regulating factor 5